PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507593.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YB
Protein Properties Length: 136aa    MW: 15312.4 Da    PI: 6.536
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.64.3e-5421114497
           NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                     q+r+lPianv+rimkk+lPa+akisk+aket+qecvsefisf+t+eas+kcq+ekrktingddl+wa++tlGfe+y+++lk+yl kyre+eg+k
  XP_004507593.1  21 QERLLPIANVGRIMKKALPAKAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYADSLKIYLLKYREIEGDK 114
                     89******************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-4919115IPR009072Histone-fold
SuperFamilySSF471132.17E-3821115IPR009072Histone-fold
PfamPF008084.2E-282488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.2E-195270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.2E-197189No hitNo description
PRINTSPR006153.2E-1990108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MGESDDESGG QGSSGYRESL QERLLPIANV GRIMKKALPA KAKISKEAKE TMQECVSEFI  60
SFITGEASEK CQKEKRKTIN GDDLVWAMTT LGFEEYADSL KIYLLKYREI EGDKNLSVAI  120
IGKEHQATTT HRFFQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4621109492Transcription factor HapC (Eurofung)
4g92_B2e-4621109492Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507593.12e-97PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233108e-59NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLI3TAW66e-76I3TAW6_MEDTR; Nuclear trancsription factor Y subunit B8
STRINGGLYMA09G01650.19e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-56nuclear factor Y, subunit B3